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Aquaculture Microbiome: Health & Performance Analytics Training | Pathogens/AMR Panels, Interventions & Dashboards

NTHRYS >> Services >> Academic Services >> Training Programs >> Bioinformatics Training >> Microbiome, Metagenomics & Environmental Bioinformatics >> Aquaculture Microbiome: Health & Performance Analytics Training | Pathogens/AMR Panels, Interventions & Dashboards

Aquaculture Microbiome: Health & Performance Analytics — Hands-on

Design and run end-to-end aquaculture microbiome analytics for ponds, raceways and RAS facilities. Learn sampling & metadata standards, amplicon and shotgun pipelines, pathogen and AMR surveillance, bloom/event diagnostics, and translate results into health, growth and FCR insights. Includes practical scorecards, intervention tracking (probiotics, biofloc, water exchanges) , and geospatial/temporal dashboards for farm decision-making.

Aquaculture Microbiome: Health & Performance Analytics
Help Desk · WhatsApp
Session 1
Fee: Rs 8800
Sampling, Water Quality & Metadata
  • Pond/RAS sampling & matrices
    • water/soil/biofilms/gills grab vs composite, depth replicates & timelines
  • Water quality & operational data
    • DO, pH, NH3/NO2/NO3 alkalinity, hardness, ORP feed/FCR, biomass, mortality
  • Metadata & standards
    • MIxS/ENVO & farm logs batch & event markers SOPs & chain-of-custody
Session 2
Fee: Rs 11800
Amplicon/Shotgun Pipelines for Aquaculture
  • Amplicons for ponds & RAS
    • 16S/ITS/18S markers DADA2/UNOISE; LULU IDTAXA/naive Bayes/BLAST LCA
  • Shotgun profiling & MAGs (overview)
    • kraken2/MetaPhlAn/HUMAnN assembly, binning & QA pathway panels (nitrifiers)
  • Compositional stats & QA
    • CLR/balances (PhILR) PERMANOVA caveats controls & decontam
Session 3
Fee: Rs 14800
Pathogens, AMR & Health Scorecards
  • Pathogen & bloom panels
    • Vibrio spp., Aeromonas, Streptococcus shrimp: AHPND/EMS, WSSV (screening) algal bloom markers & toxins
  • AMR & risk indices
    • ARG catalogs (CARD/ResFinder) mobile elements/plasmids risk scoring & thresholds
  • Health/performance scorecards
    • diversity & dysbiosis indices growth/FCR association models alerts & actionables
Session 4
Fee: Rs 18800
Interventions, Dashboards & Reproducible Reporting
  • Intervention tracking
    • probiotics/prebiotics/biofloc water exchange & disinfection before/after & controls
  • Dashboards & geo-temporal views
    • QGIS/leaflet farm maps trendlines & alerts multi-pond comparisons
  • Reporting & deliverables
    • Quarto notebooks/SOPs tables/figures + env files stakeholder summaries


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