Data Standards, Repositories & FAIR Practices — Hands-on

Ensure your metabolomics, lipidomics and fluxomics datasets meet global FAIR, reproducible and submission-ready standards. This module teaches reporting checklists, data formatting guidelines, metadata structuring, repository submission workflows (MetaboLights, GNPS) , and best practices for transparent, reusable multi-omics research.

Data Standards, Repositories & FAIR Practices (MetaboLights / GNPS)

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Session Index

Session 1 — Standards, Metadata & Reporting Session 2 — Repository Workflows (MetaboLights) Session 3 — GNPS, Molecular Networking & Curation Session 4 — Mini Capstone: FAIR Dataset Packaging

Session 1

Fee: Rs 8800

Standards, Metadata & Reporting

FAIR principles: what they mean for metabolomics

Findable Accessible Interoperable Reusable

Metadata standards for MS/NMR datasets

ISA-Tab structure sample / assay / instrument metadata controlled vocabularies

MSI/MSI Level 1–4 identification reporting (concepts)

spectral match levels QC, blanks, references reproducibility essentials

Session 2

Fee: Rs 11800

Repository Workflows — MetaboLights

Understanding the MetaboLights submission system

study metadata sheets sample sheets & assay tables file structure

Preparing raw & processed data packages

raw vendor files mzML conversion (concept) NMR spectra bundles

Submission review, public release & DOIs

pre-publication private links curator requests cite & reference datasets properly

Session 3

Fee: Rs 14800

GNPS, Molecular Networking & Curation

GNPS ecosystem overview

MS/MS library matching feature tables workflow templates

Molecular networking concepts

spectral similarity subnetwork interpretation annotation propagation

GNPS dataset submission & curation

metadata JSON spectra packaging public/private settings

Session 4

Fee: Rs 18800

Mini Capstone: FAIR Dataset Packaging

Create a repository-ready dataset bundle

Conceptual Practical

Prepare ISA-Tab, metadata, and file structure checklist

sample and assay templates raw + processed folders QC & documentation

Deliverables: FAIR package blueprint

PDF/HTML blueprint metadata summary sheet repository submission checklist

PDF

Data Standards, Repositories & FAIR Practices Training | MetaboLights & GNPS

Data Standards, Repositories & FAIR Practices — Hands-on