EHR Integration, FHIR & HL7 for Genomics — Hands-on

Build secure, interoperable pipelines that deliver genomic results directly into clinical systems. This hands-on module covers the FHIR Genomics Reporting ecosystem, mapping from VCF/JSON to FHIR resources, bridging HL7 v2/CDA, SMART on FHIR app patterns, CDS Hooks for clinical decision support, and operational governance (consent, audit, provenance, and access control) for production EHR integration.

EHR Integration, FHIR & HL7 for Genomics

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Session Index Category 5 · Clinical & Translational Bioinformatics

Session 1 — FHIR Genomics Foundations Session 2 — Mapping Pipelines & Terminologies Session 3 — SMART on FHIR & CDS Hooks Session 4 — Security, Governance & Deployment

Session 1

Fee: Rs 21920

FHIR Genomics Foundations

FHIR essentials & resources

Patient/Specimen/Observation/DiagnosticReport Genomics Reporting IG (overview) profiles & extensions

Legacy bridges

HL7 v2 ORU^R01 mapping CDA to FHIR transforms LIS/LIMS integration

EHR workflows

ordering → reporting inbox/in-basket flows longitudinal updates

Session 2

Fee: Rs 26120

Mapping Pipelines & Terminologies

VCF/JSON → FHIR mapping

variants, CNVs, fusions references & assemblies provenance links

Nomenclatures & coding

HGVS/ClinVar IDs LOINC/SNOMED/ICD-10 Gene/Transcript IDs

Results & attachments

PDF/HTML reports bundle transactions search & subscriptions

Session 3

Fee: Rs 30320

SMART on FHIR & CDS Hooks

App patterns & UX

launch/context passing patient & user scopes embedded vs standalone

Decision support hooks

order-select/order-sign cards & suggestions actionability rulesets

Testing & sandboxes

test servers & validators synthetic patients conformance checks

Session 4

Fee: Rs 35920

Security, Governance & Deployment

AuthZ/AuthN & privacy

OAuth2/OIDC/SMART scopes data minimization de-identification

Provenance, audit & consent

Provenance/AuditEvent consent directives lifecycle policies

Deployment & SRE

APIs, queues & retries monitoring & alerts change control & SOPs

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EHR Integration, FHIR & HL7 for Genomics | Interoperable Clinical Reporting & CDS

EHR Integration, FHIR & HL7 for Genomics — Hands-on