Environmental & Industrial Microbiomes — Hands-on

Learn how to design and analyse microbiome studies in environmental and industrial settings. This module covers study design and sampling for soil, water, marine and engineered systems, metagenomics workflows for environmental matrices, and analytics that support bioremediation, bioprocess monitoring, biofouling control and One Health surveillance.

Environmental & Industrial Microbiomes

Help Desk · WhatsApp

Session Index

Session 1 — Environmental & Industrial Microbiome Landscapes Session 2 — Pipelines for Environmental Metagenomes & eDNA Session 3 — Bioremediation, Bioprocess & Surveillance Analytics Session 4 — Mini Capstone: Environmental/Industrial Microbiome Case

Session 1

Fee: Rs 8800

Environmental & Industrial Microbiome Landscapes

Overview of environmental and engineered microbiomes

soil and rhizosphere communities freshwater, marine and coastal microbiomes wastewater, reactors and industrial systems

Use cases in environment and industry

bioremediation and contaminant monitoring biogas, fermentation and yield optimisation biofouling, corrosion and process stability

Study design and sampling principles

spatial and temporal replication composite vs grab samples field metadata and environmental parameters

Session 2

Fee: Rs 11800

Pipelines for Environmental Metagenomes & eDNA

Sample processing and extraction (concept level)

soil, sediment and biofilm challenges filters for water and wastewater eDNA for biodiversity and surveillance

Metagenomic preprocessing for environmental reads

quality control and contaminant checks host and non target read removal ideas co assembly vs sample level assembly thinking

Taxonomic and functional profiling in environmental data

marker gene vs whole metagenome profiling pathway and trait based summaries linking profiles to environmental gradients

Session 3

Fee: Rs 14800

Bioremediation, Bioprocess & Surveillance Analytics

Bioremediation and contaminant degradation use cases

tracking degraders and functional pathways before after and control impact designs linking microbiome shifts to chemistry and toxicity

Industrial bioprocess and fermentation monitoring

microbial community stability indicators yield, productivity and off target signatures early warning dashboards for process drifts

Environmental and wastewater surveillance analytics

indicator taxa and functional markers trend and anomaly detection ideas simple reports for regulators and plant teams

Session 4

Fee: Rs 18800

Mini Capstone: Environmental/Industrial Microbiome Case

Designing a small environmental or industrial case study

guided theory plus practical

From raw tables to decision friendly summaries

site comparison and temporal plots key taxa, pathways and indicators simple dashboards or figure panels

Deliverables: figures, tables and short narrative for project stakeholders

overview plots for environment or plant teams summary tables of indicators and trends brief report suitable for internal or client presentations

PDF

Environmental & Industrial Microbiomes Training | Soil, Water, Marine & Bioprocess Metagenomics

Environmental & Industrial Microbiomes — Hands-on