Functional Genomics & Pathway Analysis — Hands-on

Gain expertise in functional genomics and pathway analysis with end-to-end, reproducible practical sessions from expression matrices to biological insights.

Functional Genomics & Pathway Analysis

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Session Index

Session 1 — Expression & Normalization Session 2 — Enrichment & Pathways Session 3 — Networks & Modules Session 4 — Mini Capstone: Report

Session 1

Fee: Rs 6300

Expression & Normalization

Counts matrices, CPM/TPM/FPKM and library-size effects

Theory

Differential expression pipelines & contrast design

DESeq2 edgeR limma-voom

QC, batch correction & exploratory analysis

PCA UMAP Combat

Session 2

Fee: Rs 8400

Enrichment & Pathways

ORA vs GSEA: inputs, ranks & permutation schemes

Theory

Databases & term mapping

KEGG Reactome GO

Automation & visualization of enrichment outputs

clusterProfiler g:Profiler Enrichr

Session 3

Fee: Rs 11200

Networks & Modules

PPI networks & topology metrics for key drivers

STRING Cytoscape igraph

Co-expression modules & trait associations

WGCNA ME correlation Hub genes

Pathway overlay & module enrichment summaries

ReactomePA KEGGgraph ggraph

Session 4

Fee: Rs 14000

Mini Capstone: Pathways Report

Design end-to-end analysis from counts to pathways

Theory

Automate DE→GSEA→network maps with provenance

Snakemake Conda/Mamba R Markdown/Quarto

Deliver publication-ready figures & interpretations

pandas ggplot2 Cytoscape

Functional Genomics & Pathway Analysis Training | DE, GSEA/ORA, KEGG/Reactome, Cytoscape

Master differential expression, enrichment (GSEA/ORA) , KEGG/Reactome pathways, and network biology with Cytoscape—end-to-end, reproducible hands-on training.

Functional Genomics & Pathway Analysis — Hands-on