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Functional Genomics & Pathway Analysis Training | DE, GSEA/ORA, KEGG/Reactome, Cytoscape

NTHRYS >> Services >> Academic Services >> Training Programs >> Bioinformatics Training >> Genomics, Transcriptomics, Molecular Systems >> Functional Genomics & Pathway Analysis Training | DE, GSEA/ORA, KEGG/Reactome, Cytoscape

Functional Genomics & Pathway Analysis — Hands-on

Gain expertise in functional genomics and pathway analysis with end-to-end, reproducible practical sessions from expression matrices to biological insights.

Functional Genomics & Pathway Analysis
Help Desk · WhatsApp
Session 1
Fee: Rs 6300
Expression & Normalization
  • Counts matrices, CPM/TPM/FPKM and library-size effects
    • Theory
  • Differential expression pipelines & contrast design
    • DESeq2 edgeR limma-voom
  • QC, batch correction & exploratory analysis
    • PCA UMAP Combat
Session 2
Fee: Rs 8400
Enrichment & Pathways
  • ORA vs GSEA: inputs, ranks & permutation schemes
    • Theory
  • Databases & term mapping
    • KEGG Reactome GO
  • Automation & visualization of enrichment outputs
    • clusterProfiler g:Profiler Enrichr
Session 3
Fee: Rs 11200
Networks & Modules
  • PPI networks & topology metrics for key drivers
    • STRING Cytoscape igraph
  • Co-expression modules & trait associations
    • WGCNA ME correlation Hub genes
  • Pathway overlay & module enrichment summaries
    • ReactomePA KEGGgraph ggraph
Session 4
Fee: Rs 14000
Mini Capstone: Pathways Report
  • Design end-to-end analysis from counts to pathways
    • Theory
  • Automate DE→GSEA→network maps with provenance
    • Snakemake Conda/Mamba R Markdown/Quarto
  • Deliver publication-ready figures & interpretations
    • pandas ggplot2 Cytoscape


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