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Germline Diagnostics & Carrier Screening Pipelines | Trio Analysis, CNV/SV, Residual Risk

NTHRYS >> Services >> Academic Services >> Training Programs >> Bioinformatics Training >> Clinical & Translational Bioinformatics / Precision Medicine >> Germline Diagnostics & Carrier Screening Pipelines | Trio Analysis, CNV/SV, Residual Risk

Germline Diagnostics & Carrier Screening Pipelines — Hands-on

Build auditable, production-grade pipelines for germline diagnostics and carrier screening. From raw reads to interpretive reports, learn trio/singleton analysis, inheritance-based prioritization, CNV/SV detection in germline contexts, residual risk calculations, and ACMG/AMP classification with clear, clinician-ready outputs.

Germline Diagnostics & Carrier Screening Pipelines
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Session 1
Fee: Rs 17120
Germline Pipeline Foundations
  • Pre-processing & calling (germline)
  • BWA MEM2 / GATK BQSR / dedup HaplotypeCaller (GVCF)
  • Quality metrics & coverage
  • %20x/%30x targets callability/gaps hard-to-sequence loci
  • Annotation & gene panels
  • VEP/snpEff clinically curated lists transcripts/MANE
Session 2
Fee: Rs 21320
Inheritance Models & Prioritization
  • Trio & singleton strategies
  • de novo / AR / AD / X-linked compound het segregation
  • Phenotype-driven ranking
  • HPO mapping OMIM/Orphanet gene–disease validity
  • Population & artifact filters
  • gnomAD/MAF thresholds low-complexity regions technical flags
Session 3
Fee: Rs 25520
CNV/SV in Germline & Carrier Screening
  • CNV calling (exon-level)
  • ExomeDepth/CNVkit reference panels QC & thresholds
  • Germline SV detection
  • Manta/GRIDSS (overview) breakpoint checks orthogonal MLPA/ddPCR
  • Carrier screening workflows
  • panel design & genes detection rate & coverage partner testing
Session 4
Fee: Rs 31120
Classification, Residual Risk & Reporting
  • ACMG/AMP classification (germline)
  • PVS1/PS/PM/PP BS/BP Bayesian adjustments
  • Residual risk & counseling notes
  • detection rate × prevalence ethnicity considerations VUS handling
  • Reports, reanalysis & QA
  • templates & disclaimers reclassification cadence audit trails & SOPs


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