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Mass Spectrometry Based Proteomics — Design & QC Training | Acquisition, Suitability, Contamination, QC Dashboards

NTHRYS >> Services >> Academic Services >> Training Programs >> Bioinformatics Training >> Proteomics, Structural Bioinformatics & Biophysical Modeling >> Mass Spectrometry Based Proteomics — Design & QC Training | Acquisition, Suitability, Contamination, QC Dashboards

Mass Spectrometry Based Proteomics — Design & QC — Hands-on

Design and operate high-confidence LC–MS/MS proteomics studies. You will configure acquisition methods (DDA/DIA/SRM/PRM) , implement system suitability and calibration, control contamination and carryover, plan run orders and batches, and track performance via practical QC dashboards.

Mass Spectrometry Based Proteomics — Design & QC
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Session 1
Fee: Rs 12320
Acquisition Strategies & Method Design
  • DDA / DIA / PRM / SRM — when & why
  • coverage vs. quant goals cycle time & multiplexing isolation schemes
  • LC method design
  • gradient optimization column selection & care loading & carryover checks
  • Instrument parameters
  • AGC / IT resolution & scan ranges HCD/CE settings
Session 2
Fee: Rs 16520
System Suitability, Calibration & Tuning
  • Reference mixes & standards
  • iRT / PRTC BSA / HeLa digest SCT peptides
  • Calibration & tuning routines
  • mass accuracy (ppm) sensitivity & S/N spray stability
  • Acceptance thresholds & logs
  • daily/weekly SOPs trend charts preventive maintenance
Session 3
Fee: Rs 20720
Contamination Control & Run Order Planning
  • Contaminants & background
  • keratin / plasticizers column bleed solvent hygiene
  • Carryover mitigation
  • blank & wash cycles needle washes divert valves
  • Run order & batching
  • randomization/blocks QC between samples pooled QC & anchors
Session 4
Fee: Rs 26320
QC Metrics, Dashboards & Acceptance Criteria
  • Live & post-run QC metrics
  • TIC/base peak MS2 ID rates RT stability (iRT)
  • Quant precision & stability
  • %CV thresholds mass accuracy (ppm) peak shapes & FWHM
  • Dashboards & reports
  • automated QC charts run acceptance checklist issue triage SOPs


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