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Rare Disease Genomics & Variant Prioritization | Trio WES/WGS, ACMG & Reanalysis

NTHRYS >> Services >> Academic Services >> Training Programs >> Bioinformatics Training >> Clinical & Translational Bioinformatics / Precision Medicine >> Rare Disease Genomics & Variant Prioritization | Trio WES/WGS, ACMG & Reanalysis

Rare Disease Genomics & Variant Prioritization — Hands-on

Diagnose rare diseases with a rigorous, phenotype-driven workflow. This module takes you from deep clinical phenotyping and pedigree modeling through trio-based WES/WGS analysis, multi-class variant discovery (SNV/INDEL/CNV/SV) , prioritization with in-silico scores and population constraint, and final ACMG/AMP interpretation with audit-ready reports and reanalysis strategies.

Rare Disease Genomics & Variant Prioritization
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Session 1
Fee: Rs 24920
Phenotyping, Pedigrees & Inheritance
  • Deep phenotyping
  • HPO terming & granularity OMIM/Orphanet crosswalks phenotype-driven ranking (overview)
  • Pedigrees & models
  • AR/AD/X-linked/mitochondrial compound het & de novo segregation checklists
  • Sample/metadata readiness
  • trio/quad strategies consent & recontact phenopackets (overview)
Session 2
Fee: Rs 29120
Trio WES/WGS: QC, Calling & Filtering
  • Quality control & coverage
  • depth/uniformity/dup rates target capture pitfalls sex/relatedness checks
  • Variant classes
  • SNV/INDEL (joint calling) CNV/SV (exome & genome) mitochondrial & repeat expansions (overview)
  • Filtering & inheritance models
  • de novo/compound het/recessive population AF <= thresholds (gnomAD) artifact & blacklist pruning
Session 3
Fee: Rs 33320
Interpretation & Prioritization
  • Evidence assembly
  • ClinVar/ClinGen/OMIM gene–disease validity constraint & intolerance
  • In-silico & splicing
  • CADD/REVEL/M-CAP SpliceAI/MaxEnt (overview) conservation/PP3 aggregation
  • ACMG/AMP for rare disease
  • criteria application & conflicts segregation/PS2/PP1 strength VUS management & upgrades
Session 4
Fee: Rs 38920
Reporting, Reanalysis & Data Sharing
  • Clinical reporting & counseling support
  • clear narratives & caveats secondary/incidental findings (overview) confirmatory testing guidance
  • Reanalysis & matchmaking
  • knowledge updates & SLAs GeneMatcher/Matchmaker (overview) phenotype drift handling
  • Data sharing & registries
  • ClinVar/DECIPHER submissions consent & de-ID FAIR principles


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