Reporting Standards, Visualization & FAIR Data in Glycomics — Hands-on

Learn how to make glycomics and glycoproteomics results publication ready, reusable and compliant with community standards. This module covers MIRAGE and related guidelines, metadata design, file formats, repository submission and visualization workflows so that your glycan data, spectra and quantitative tables can be shared, reanalyzed and trusted.

Reporting Standards, Visualization & FAIR Data in Glycomics

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Session Index

Session 1 — MIRAGE Guidelines & FAIR Foundations Session 2 — File Formats, Metadata & Repositories Session 3 — Visualization, Dashboards & Summaries Session 4 — Mini Capstone: FAIR Glycomics Report Package

Session 1

Fee: Rs 8800

MIRAGE Guidelines & FAIR Foundations

Why standards? Reproducibility and reuse in glycomics

FAIR principles (Findable Accessible Interoperable Reusable) role of metadata and ontology terms journal and reviewer expectations

MIRAGE guidelines for glycomics and MS experiments

sample prep and derivatization details instrument setup and acquisition parameters data processing, FDR and identification criteria

Connecting MIRAGE to lab workflows and notebooks

checklists and templates for experiments capturing key fields during acquisition bridging ELN / LIMS to reporting packages

Session 2

Fee: Rs 11800

File Formats, Metadata & Repositories

Core file formats and encodings in glycomics

raw vendor formats and mzML glycan encodings (GlycoCT, WURCS, SNFG strings) identification / quant tables and exports

Designing metadata tables for experiments and samples

sample, run and file level descriptors controlled vocabularies and IDs linking spectra, glycans and quant data

Repositories and submission workflows

GlyGen, UniCarbKB, GlyTouCan concepts PRIDE / MassIVE style submissions checklists before upload and accessioning

Session 3

Fee: Rs 14800

Visualization, Dashboards & Summaries

Visualizing glycan structures and compositions

SNFG diagrams and motif views composition barplots and profiles site occupancy and microheterogeneity plots

Quantitative summaries and QC views for reports

technical replicate consistency batch and run level checks simple normalization and scaling displays

Dashboards and exportable figures for manuscripts

spreadsheet, R/Python based dashboards PDF/PNG ready charts and tables linking static figures to underlying data files

Session 4

Fee: Rs 18800

Mini Capstone: FAIR Glycomics Report Package

Assemble a MIRAGE and FAIR compliant mini dataset

from raw files and tables to metadata sheets

Prepare repository ready folders and documentation

file and directory organization plan README and methods summary checklist against standards

Deliverables: report bundle, figures and submission notes

data and metadata spreadsheets exportable plots and tables short narrative on reuse and limitations

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Reporting Standards, Visualization & FAIR Data in Glycomics Training | MIRAGE, Repositories & Dashboards

Reporting Standards, Visualization & FAIR Data in Glycomics — Hands-on