Designed, Programmed, & Maintained by Balaji S Rao
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Taxonomic Profiling & Strain-Level Typing Training | Kraken2/Bracken, MetaPhlAn, inStrain/MIDAS
Accurate community profiling from shotgun data: Kraken2/Bracken, MetaPhlAn/mOTUs, Centrifuge/Kaiju; database choice (GTDB/UHGG/RefSeq); and strain-level typing with StrainPhlAn, inStrain, MIDAS.
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