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Virome & Bacteriophage Informatics Training | VirSorter2/VIBRANT, CheckV, vContact2 & Host Linking

NTHRYS >> Services >> Academic Services >> Training Programs >> Bioinformatics Training >> Microbiome, Metagenomics & Environmental Bioinformatics >> Virome & Bacteriophage Informatics Training | VirSorter2/VIBRANT, CheckV, vContact2 & Host Linking

Virome & Bacteriophage Informatics — Hands-on

Learn end-to-end virome and bacteriophage analytics from raw reads/assemblies to high-confidence viral catalogs and host linkage. You'll detect and curate viral contigs with state-of-the-art tools, evaluate genome quality (MIUViG) , infer taxonomy and gene-sharing networks, connect phages to hosts, and build publication-ready figures and dashboards for clinical, environmental and industrial applications.

Virome & Bacteriophage Informatics
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Session 1
Fee: Rs 8800
Virome Concepts, Intake & QC
  • Virome study types & enrichments
  • VLP vs total DNA/RNA size filters & enzymes long-read support (overview)
  • Data intake & quality control
  • adapter/quality trimming host/prokaryote depletion low-biomass safeguards
  • Assembly considerations
  • metaSPAdes/MEGAHIT contig length/coverage filters circularity detection
Session 2
Fee: Rs 11800
Viral Discovery & Quality (MIUViG)
  • Detection & curation tools
  • VirSorter2 / VIBRANT VirFinder / DeepVirFinder PHASTER (prophage)
  • Quality & completeness
  • CheckV & MIUViG tiers contamination/chimerism flags termini & circularization
  • Annotation & catalogs
  • DRAM-v / Prokka IMG/VR & RefSeq Viral dedup/derep strategies
Session 3
Fee: Rs 14800
Taxonomy, Networks & Host Linking
  • Taxonomy & gene-sharing networks
  • vContact2 clusters GTDB/ICTV context phylogenomics (markers)
  • Host prediction & linkage
  • CRISPR spacer matches WIsH / VirHostMatcher tRNA/oligo patterns; read mapping
  • Prophage discovery & dynamics
  • PhiSpy / PHASTER induction signals link to MAGs
Session 4
Fee: Rs 18800
Ecology, Reporting & Dashboards
  • Virome ecology & statistics
  • alpha/beta diversity (viral) compositional DA temporal/spatial patterns
  • Visualization & dashboards
  • network plots & chord heatmaps & stacked bars Quarto reports
  • Packaging & dissemination
  • catalogs + metadata reproducible exports SOPs & templates


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