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Workflow Containerization — Docker & Singularity Training | HPC/Cloud, Security & SBOMs

NTHRYS >> Services >> Academic Services >> Training Programs >> Bioinformatics Training >> AI/ML, Data Science, Pipelines & Cloud >> Workflow Containerization — Docker & Singularity Training | HPC/Cloud, Security & SBOMs

Workflow Containerization — Docker & Singularity — Hands-on

Design lean, portable, and secure containers for bioinformatics pipelines across laptops, clusters, and clouds. Learn Docker & Singularity/Apptainer fundamentals, build and optimize multi-arch images with CUDA/MPI, push to enterprise registries, generate SBOMs, scan for CVEs, and ship provenance-aware, reproducible environments for HPC/Cloud execution.

Workflow Containerization — Docker & Singularity/Apptainer
Help Desk · WhatsApp
Session 1
Fee: Rs 15,600
OCI Basics, Dockerfiles & Reproducibility
  • OCI, images & layers
    • Docker/Podman Apptainer/Singularity image anatomy
  • Dockerfiles & recipes
    • multi-stage builds micromamba/conda layer minimization
  • Reproducibility patterns
    • pinning & lockfiles deterministic builds buildx & cache
Session 2
Fee: Rs 21,000
GPU, MPI & Performance Tuning
  • CUDA & GPU containers
    • NVIDIA Container Toolkit cuDNN/cuBLAS multi-arch (x86/ARM)
  • HPC & MPI in containers
    • OpenMPI/MPICH IB/RDMA basics bind mounts/permissions
  • Performance & size
    • slim images I/O & cache tuning startup latency
Session 3
Fee: Rs 26,600
Registries, SBOMs & Security
  • Push/pull & distribution
    • GHCR/ECR/GCR/ACR artifact registries immutability/tags
  • Security & compliance
    • Trivy/Grype scans SLSA/in-toto attestations Cosign signing
  • SBOMs & provenance
    • Syft/CycloneDX Licenses & CVEs policy gates
Session 4
Fee: Rs 32,400
Mini Capstone: Containerized Workflow
  • Package a GPU/HPC-ready container for an omics task
    • Theory + Practical
  • Integrate with Snakemake/Nextflow
    • profiles/executors params/schema MultiQC/report
  • Deliverables: image, SBOM & runbook
    • registry artifact signed attestations PDF/HTML guide


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