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Environmental Bioinformatics Workshops

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Showing 1–12 of 50 categories
DNA Sequencing Data Analysis Fundamentals
Training for environmental technicians on processing, quality control, and basic analysis of DNA sequencing datasets from environmental samples.
3+WORKSHOPS
PROGRAMMES
Quality Control and Preprocessing of Sequencing Reads Reference Genome Alignment and Variant Calling Workflows Metagenomic Analysis and Taxonomic Classification Methods +2 more programmes
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Metagenomic Analysis Workflow Practical
Hands-on workshop teaching bioinformaticians and ecologists how to assemble, annotate, and interpret metagenomic data from soil and water environments.
3+WORKSHOPS
PROGRAMMES
16S rRNA Amplicon Sequencing Data Processing Whole Genome Shotgun Metagenomic Assembly Pipelines Functional Annotation and Pathway Reconstruction Workflows +2 more programmes
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QIIME 2 Microbiome Data Processing
Intermediate training on using QIIME 2 software for taxonomic classification, diversity analysis, and statistical interpretation of environmental microbiome datasets.
3+WORKSHOPS
PROGRAMMES
16S rRNA Amplicon Sequencing Pipeline Construction Taxonomic Assignment and Abundance Profiling Methods Phylogenetic Tree Construction for Diversity Analysis +2 more programmes
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Environmental DNA Field Sampling Protocols
Certification course for field technicians on proper collection, preservation, and chain-of-custody procedures for environmental DNA samples.
3+WORKSHOPS
PROGRAMMES
Water Column eDNA Extraction and Purification Techniques Soil eDNA Collection and Metagenomic Library Preparation Chain of Custody and Field Sample Documentation Standards +2 more programmes
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Bioinformatics Pipeline Development Linux
Training for bioinformaticians on designing, scripting, and optimizing automated analysis pipelines using Linux command-line tools and shell scripting.
3+WORKSHOPS
PROGRAMMES
Building Reproducible NGS Analysis Pipelines Linux High Performance Computing Optimization Environmental Genomics Advanced Shell Scripting Bioinformatics Data Processing +2 more programmes
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Phylogenetic Tree Construction Analysis
Workshop teaching researchers how to build, interpret, and present phylogenetic trees from environmental sequence data using industry-standard software.
3+WORKSHOPS
PROGRAMMES
Maximum Likelihood Inference for Molecular Evolution Bayesian Phylogenetic Analysis with MCMC Sampling Sequence Alignment Optimization for Phylogenetic Accuracy +2 more programmes
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Water Quality Bioinformatics Assessment
Specialized training for water quality professionals on using bioinformatics tools to assess microbial communities and pollution indicators in aquatic environments.
3+WORKSHOPS
PROGRAMMES
Metagenomic Analysis for Microbial Water Quality Assessment 16S rRNA Gene Sequencing Pipeline Implementation and Interpretation Biomarker Discovery in Water Quality Monitoring Data +2 more programmes
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Soil Microbiome Characterization Techniques
Hands-on program teaching soil scientists and technicians how to profile soil microbial communities using molecular and bioinformatic methods.
3+WORKSHOPS
PROGRAMMES
16S rRNA Gene Sequencing and Taxonomic Classification Metagenomic Assembly and Functional Gene Annotation Quantitative PCR Methods for Microbial Quantification +2 more programmes
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Next-Generation Sequencing Quality Control
Technical training for laboratory staff on implementing quality control procedures and troubleshooting NGS workflows in environmental genomics laboratories.
3+WORKSHOPS
PROGRAMMES
FastQC and Quality Metrics Interpretation for NGS Data Trimming and Filtering Strategies in Bioinformatics Pipelines Read Alignment Quality Control and Mapping Statistics +2 more programmes
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Biodiversity Index Calculation Software
Training program teaching ecologists how to calculate, visualize, and interpret biodiversity indices from environmental DNA and RNA datasets.
3+WORKSHOPS
PROGRAMMES
Shannon Diversity and Simpson Index Implementation Rarefaction Curve Analysis for Species Richness Taxonomic Abundance Profiling with Metagenomic Data +2 more programmes
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Microbial Taxonomy Annotation Methods
Intermediate course for bioinformaticians on assigning taxonomic identities to environmental sequences using reference databases and classification algorithms.
3+WORKSHOPS
PROGRAMMES
16S rRNA Gene Sequence Classification and OTU Assignment Metagenomic Shotgun Sequencing Data Annotation Pipeline QIIME 2 Workflow for Amplicon Sequence Variant Analysis +2 more programmes
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Environmental RNA Sequencing Analysis
Specialized workshop on processing metatranscriptomic data to understand functional gene expression in environmental microbial communities.
3+WORKSHOPS
PROGRAMMES
Metatranscriptomic Assembly and Annotation Workflows Differential Expression Analysis in Environmental Samples Environmental RNA-Seq Quality Control and Preprocessing +2 more programmes
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