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Genome Annotation Workshops

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Showing 1–12 of 50 categories
Gene Structure Annotation Fundamentals
Beginner-level training covering basic gene identification, exon-intron boundaries, and structural feature annotation for entry-level annotators.
3+WORKSHOPS
PROGRAMMES
Gene Structure Identification and Feature Mapping Open Reading Frame Detection and Translation Start Sites Splice Site Prediction and Transcript Structure Validation +2 more programmes
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Protein Domain Identification and Mapping
Intermediate training on recognizing conserved protein domains using tools like Pfam and InterProScan for functional annotation.
3+WORKSHOPS
PROGRAMMES
Pfam Database Queries for Protein Domains InterProScan Integration and Results Interpretation SMART Domain Architecture Analysis and Visualization +2 more programmes
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BLAST Database Searching Techniques
Hands-on workshop teaching sequence similarity searching, database selection, and result interpretation for sequence comparison specialists.
3+WORKSHOPS
PROGRAMMES
BLAST Query Optimization for Genomic Sequences Building Custom BLAST Databases from Sequences Multi-Database BLAST Search Strategy and Integration +2 more programmes
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RNA-Seq Data Integration Workflow
Advanced training on mapping transcriptomics data to genomic coordinates for evidence-based gene annotation.
3+WORKSHOPS
PROGRAMMES
RNA-Seq Read Alignment and Quantification Pipeline Integrating Multi-Sample RNA-Seq Into Genome Annotation Differential Expression Analysis and Isoform Discovery +2 more programmes
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Prokaryotic Genome Annotation Pipeline
Specialized training covering bacterial and archaeal genome annotation including ORF prediction and operon identification.
3+WORKSHOPS
PROGRAMMES
Prokaryotic Gene Prediction and ORF Detection Functional Annotation with Sequence Homology Searches Structural RNA and Non-coding Element Annotation +2 more programmes
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Eukaryotic Gene Model Curation
Advanced hands-on training for manual curation of complex eukaryotic gene structures with multiple isoforms.
3+WORKSHOPS
PROGRAMMES
Manual Gene Model Annotation in Eukaryotes Splice Site Prediction and Exon Boundary Refinement UTR Definition and Regulatory Element Mapping +2 more programmes
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Apollo Genome Browser Operating
Software-specific training on using Apollo platform for collaborative genome annotation and real-time curation.
3+WORKSHOPS
PROGRAMMES
Apollo Genome Browser Feature Annotation Mastery Collaborative Genome Curation with Apollo Platform Evidence Integration and Track Management Apollo +2 more programmes
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Repeatmasker and Transposable Elements
Specialized workshop on identifying and masking repetitive sequences and transposable elements in genomic sequences.
3+WORKSHOPS
PROGRAMMES
RepeatMasker Workflow for Genome Assembly Transposable Element Classification and Detection Advanced RepeatModeler for de novo TE Discovery +2 more programmes
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Comparative Genomics Annotation Methods
Intermediate training on using orthology and synteny information to improve annotation quality across species.
3+WORKSHOPS
PROGRAMMES
Synteny Analysis and Comparative Gene Mapping Ortholog Identification Using OrthoMCL Pipeline Phylogenetic Profiling for Functional Annotation +2 more programmes
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Variant Effect Prediction and Classification
Advanced training on predicting functional consequences of genetic variants using multiple computational tools.
3+WORKSHOPS
PROGRAMMES
Variant Effect Prediction Using SIFT and PolyPhen VEP Pipeline Implementation for High Throughput Annotation Classification of Variants Using ACMG Guidelines +2 more programmes
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Quality Control in Genome Annotation
Training program covering validation metrics, accuracy assessment, and standardized QC protocols for annotators.
3+WORKSHOPS
PROGRAMMES
Variant Calling Quality Metrics and Validation Sequence Alignment Assessment and Troubleshooting Gene Structure Validation and Annotation Verification +2 more programmes
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GFF and GTF File Format Mastery
Technical training on standardized genome feature file formats, parsing, validation, and best practices.
3+WORKSHOPS
PROGRAMMES
GFF3 File Structure and Validation Essentials GTF Format Parsing and Feature Extraction Converting Between GFF GTF and BED Formats +2 more programmes
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